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BMC Bioinformatics|October 7, 2006
M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related speciesTodd J Treangen, Xavier MesseguerMethods in Molecular Biology (Clifton, N.J.)|November 21, 2007
Analyzing patterns of microbial evolution using the mauve genome alignment systemAaron E Darling, Todd J Treangen, Xavier Messeguer, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|May 2, 2009
A novel heuristic for local multiple alignment of interspersed DNA repeatsTodd J Treangen, Aaron E Darling, Guillaume Achaz, et al.Genome Biology|December 29, 2012
Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA cloneTodd J Treangen, Adam M PhillippyNature Reviews. Genetics|November 30, 2011
Repetitive DNA and next-generation sequencing: computational challenges and solutionsTodd J Treangen, Steven L SalzbergBioinformatics (Oxford, England)|September 20, 2011
Bambus 2: scaffolding metagenomesSergey Koren, Todd J Treangen, Mihai PopPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 31, 2023
KombOver: Efficient k-core and K-truss based characterization of perturbations within the human gut microbiomeNicolae Sapoval, Marko Tanevski, Todd J TreangenPlos Genetics|February 8, 2011
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotesTodd J Treangen, Eduardo P C RochaBioinformatics (Oxford, England)|June 30, 2023
Bakdrive: identifying a minimum set of bacterial species driving interactions across multiple microbial communitiesQi Wang, Michael Nute, Todd J TreangenBiorxiv : the Preprint Server for Biology|April 10, 2026
Leveraging spectrum of graph sheaf Laplacian as a genome-architecture-aware measure of microbiome diversityNicolae Sapoval, Todd J Treangen, Luay NakhlehPageof 13