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Bioinformatics Advances|May 27, 2024
DeGeCI 1.1: a web platform for gene annotation of mitochondrial genomesLisa Fiedler, Matthias Bernt, Martin MiddendorfBioinformatics (Oxford, England)|January 24, 2007
Using median sets for inferring phylogenetic treesMatthias Bernt, Daniel Merkle, Martin MiddendorfFrontiers in Genetics|August 28, 2023
Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphsLisa Fiedler, Martin Middendorf, Matthias BerntIEEE/ACM Transactions on Computational Biology and Bioinformatics|May 17, 2019
Sorting Signed Permutations by Inverse Tandem Duplication Random LossesTom Hartmann, Max Bannach, Martin MiddendorfBiology|May 17, 2014
Local similarity search to find gene indicators in mitochondrial genomesRuby L V Moritz, Matthias Bernt, Martin MiddendorfBMC Bioinformatics|June 5, 2023
Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphsLisa Fiedler, Matthias Bernt, Martin Middendorf, et al.Molecular Phylogenetics and Evolution|October 2, 2012
Bioinformatics methods for the comparative analysis of metazoan mitochondrial genome sequencesMatthias Bernt, Anke Braband, Martin Middendorf, et al.Nucleic Acids Research|December 6, 2011
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangementsFrank Jühling, Joern Pütz, Matthias Bernt, et al.Nucleic Acids Research|October 5, 2019
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomesAlexander Donath, Frank Jühling, Marwa Al-Arab, et al.Bioinformatics (Oxford, England)|September 27, 2007
CREx: inferring genomic rearrangements based on common intervalsMatthias Bernt, Daniel Merkle, Kai Ramsch, et al.Pageof 7