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Plos Computational Biology|July 7, 2020
Electrostatic and bending energies predict staggering and splaying in nonmuscle myosin II minifilamentsTom L Kaufmann, Ulrich S SchwarzBioinformatics (Oxford, England)|February 24, 2023
SMITH: spatially constrained stochastic model for simulation of intra-tumour heterogeneityAdam Streck, Tom L Kaufmann, Roland F SchwarzPlos Computational Biology|October 23, 2023
Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneityThomas B K Watkins, Emma C Colliver, Matthew R Huska, et al.Genome Biology|November 15, 2022
MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolutionTom L Kaufmann, Marina Petkovic, Thomas B K Watkins, et al.Iscience|December 5, 2024
Copy-number dosage regulates telomere maintenance and disease-associated pathways in neuroblastomaMartin Burkert, Eric Blanc, Nina Thiessen, et al.The Journal of Pathology|October 30, 2025
Phylogenetic analysis of paired breast carcinomas identifies genetic events associated with clonal recurrence and invasive progressionTanjina Kader, Maia Zethoven, Sakshi Mahale, et al.Pageof 1