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JAMA Network Open|December 21, 2020
Effects of Fecal Microbiome Transfer in Adolescents With Obesity: The Gut Bugs Randomized Controlled TrialKaren S W Leong, Thilini N Jayasinghe, Brooke C Wilson, et al.Genome Medicine|November 30, 2017
A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patientsAndrew Brantley Hall, Moran Yassour, Jenny Sauk, et al.Cell Host & Microbe|February 10, 2015
The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetesAleksandar D Kostic, Dirk Gevers, Heli Siljander, et al.Frontiers in Cellular and Infection Microbiology|July 3, 2020
Differences in Compositions of Gut Bacterial Populations and Bacteriophages in 5-11 Year-Olds Born Preterm Compared to Full TermThilini N Jayasinghe, Tommi Vatanen, Valentina Chiavaroli, et al.Nature|October 26, 2018
The human gut microbiome in early-onset type 1 diabetes from the TEDDY studyTommi Vatanen, Eric A Franzosa, Randall Schwager, et al.Nature Communications|January 22, 2026
Phosphorothioate DNA modification by BREX type 4 systems in the human gut microbiomeYifeng Yuan, Michael S DeMott, Shane R Byrne, et al.Cell|May 3, 2016
Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in HumansTommi Vatanen, Aleksandar D Kostic, Eva d'Hennezel, et al.Cell|November 2, 2022
A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaningTommi Vatanen, Qi Yan Ang, Léa Siegwald, et al.Nature Microbiology|February 7, 2019
Publisher Correction: Genomic variation and strain-specific functional adaptation in the human gut microbiome during early lifeTommi Vatanen, Damian R Plichta, Juhi Somani, et al.Nature Communications|December 3, 2025
Microbiome-derived bile acid signatures in early life and their association with islet autoimmunitySantosh Lamichhane, Alex M Dickens, Tanja Buchacher, et al.Pageof 7