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Genome Medicine|June 29, 2018
Genomic surveillance of avian-origin influenza A viruses causing human diseaseTommy T Lam, Oliver G PybusVirus Evolution|October 25, 2016
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)Andrew Rambaut, Tommy T Lam, Luiz Max Carvalho, et al.Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases|October 22, 2013
Viral evolution explains the associations among hepatitis C virus genotype, clinical outcomes, and human genetic variationRebecca Rose, Peter V Markov, Tommy T Lam, et al.Virus Evolution|September 9, 2024
F1ALA: ultrafast and memory-efficient ancestral lineage annotation applied to the huge SARS-CoV-2 phylogenyYongtao Ye, Marcus H Shum, Isaac Wu, et al.Imeta|June 13, 2024
Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation dataShuangbin Xu, Lin Li, Xiao Luo, et al.The Lancet. Infectious Diseases|May 2, 2017
Global epidemiology of non-influenza RNA respiratory viruses: data gaps and a growing need for surveillanceJulian W Tang, Tommy T Lam, Hassan Zaraket, et al.Proceedings of the National Academy of Sciences of the United States of America|October 6, 2025
Phylogenomics redefines the evolutionary history of mosquitoesMac P Pierce, Brian M Worthington, Shaolin Han, et al.Briefings in Bioinformatics|June 7, 2022
ggmsa: a visual exploration tool for multiple sequence alignment and associated dataLang Zhou, Tingze Feng, Shuangbin Xu, et al.Emerging Infectious Diseases|May 23, 2013
Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirusMatthew Cotten, Tommy T Lam, Simon J Watson, et al.Bioinformatics (Oxford, England)|December 3, 2019
Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong regionSimon Dellicour, Philippe Lemey, Jean Artois, et al.Pageof 2