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The Journal of Physical Chemistry. A|February 26, 2025
Quantum Chemical Calculations of the Nonenzymatic Bicarbonate Ion-Catalyzed Lactamization of Ornithine Residues to Identify the Components of Primitive ProteinsAyato Mizuno, Tomoki Nakayoshi, Eiji Kurimoto, et al.
ACS Omega|June 13, 2022
Predicting Reaction Mechanisms for the Threonine-Residue Stereoinversion Catalyzed by a Dihydrogen Phosphate IonTomoki Nakayoshi, Koichi Kato, Eiji Kurimoto, et al.
Molecules (Basel, Switzerland)|October 13, 2017
Validation of Molecular Dynamics Simulations for Prediction of Three-Dimensional Structures of Small ProteinsKoichi Kato, Tomoki Nakayoshi, Shuichi Fukuyoshi, et al.
Scientific Reports|August 14, 2019
Three dimensional structures of putative, primitive proteins to investigate the origin of homochiralityAkifumi Oda, Tomoki Nakayoshi, Koichi Kato, et al.
ACS Omega|June 18, 2020
Molecular Dynamics Simulations for Three-Dimensional Structures of Orotate Phosphoribosyltransferases Constructed from a Simplified Amino Acid SetKoichi Kato, Tomoki Nakayoshi, Mizuha Sato, et al.
Journal of Computational Chemistry|July 23, 2025
Reduction-Induced Structural and Motional Changes of Plant-Type Ferredoxin Using Molecular Dynamics and Umbrella Sampling SimulationsTomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, et al.
ACS Omega|November 15, 2021
Computational Analysis of the Mechanism of Nonenzymatic Peptide Bond Cleavage at the C-Terminal Side of an Asparagine ResidueKoichi Kato, Tomoki Nakayoshi, Yoshinobu Ishikawa, et al.
Biological & Pharmaceutical Bulletin|May 19, 2024
Computational Estimation of Residues Involving Resistance to the SARS-CoV-2 Main Protease Inhibitor Ensitrelvir Based on Virtual Alanine Scan of the Active SiteAyato Mizuno, Tomoki Nakayoshi, Koichi Kato, et al.
Biochemistry|May 8, 2023
Identification of the Most Impactful Asparagine Residues for γS-Crystallin Aggregation by DeamidationKoichi Kato, Tomoki Nakayoshi, Yuki Kitamura, et al.
International Journal of Molecular Sciences|July 29, 2025
Investigation of the Effect of C-Terminal Adjacent Phenylalanine Residues on Asparagine Deamidation by Quantum Chemical CalculationsKoichi Kato, Haruka Asai, Tomoki Nakayoshi, et al.
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