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International Journal of Molecular Sciences|January 9, 2021
Molecular Mechanisms of Succinimide Formation from Aspartic Acid Residues Catalyzed by Two Water Molecules in the Aqueous PhaseTomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, et al.
The Journal of Physical Chemistry. B|May 10, 2024
Theoretical Studies on the Reaction Mechanism of Schiff Base Formation from HexosesKoichi Kato, Tomoki Nakayoshi, Yasuro Shinohara, et al.
Biological & Pharmaceutical Bulletin|March 29, 2026
Effect of Cytochrome P450 3A4 Genetic Polymorphisms on Heme Recognition by Using Molecular Dynamics SimulationsAyato Mizuno, Tomoki Nakayoshi, Emi Mizutani, et al.
Chirality|March 13, 2018
Computational studies on the water-catalyzed stereoinversion mechanism of glutamic acid residues in peptides and proteinsTomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, et al.
Life (Basel, Switzerland)|January 21, 2023
Effect of the Addition of the Fifth Amino Acid to [GADV]-Protein on the Three-Dimensional StructureKoichi Kato, Tomoki Nakayoshi, Ryota Oyaizu, et al.
Biochimica Et Biophysica Acta. Proteins and Proteomics|January 7, 2018
Comparison of the activation energy barrier for succinimide formation from α- and β-aspartic acid residues obtained from density functional theory calculationsTomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, et al.
International Journal of Molecular Sciences|December 23, 2022
Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics SimulationsTomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, et al.
Biological & Pharmaceutical Bulletin|March 13, 2024
Structural Impact Assessment of Cytochrome P450 2A13 Polymorphisms Using Molecular Dynamics SimulationsKoichi Kato, Tomoki Nakayoshi, Sho Hioki, et al.
Chirality|February 3, 2018
Validation of molecular force field parameters for peptides including isomerized amino acidsAkifumi Oda, Tomoki Nakayoshi, Shuichi Fukuyoshi, et al.
Journal of Molecular Graphics & Modelling|August 12, 2022
Structural investigation of pathogenic variants in dihydropyrimidinase using molecular dynamics simulationsKoichi Kato, Tomoki Nakayoshi, Ayuka Nagura, et al.
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