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Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|March 19, 2013
Three-dimensional structure determination protocol for noncrystalline biomolecules using x-ray free-electron laser diffraction imagingTomotaka Oroguchi, Masayoshi NakasakoScientific Reports|November 22, 2017
Influences of lone-pair electrons on directionality of hydrogen bonds formed by hydrophilic amino acid side chains in molecular dynamics simulationTomotaka Oroguchi, Masayoshi NakasakoThe Journal of Chemical Physics|January 19, 2011
Effects of ionic strength on SAXS data for proteins revealed by molecular dynamics simulationsTomotaka Oroguchi, Mitsunori IkeguchiScientific Reports|May 20, 2016
Changes in hydration structure are necessary for collective motions of a multi-domain proteinTomotaka Oroguchi, Masayoshi NakasakoJournal of Synchrotron Radiation|December 25, 2015
Classification and assessment of retrieved electron density maps in coherent X-ray diffraction imaging using multivariate analysisYuki Sekiguchi, Tomotaka Oroguchi, Masayoshi NakasakoBiochimica Et Biophysica Acta. General Subjects|August 5, 2019
Dipole-dipole interactions between tryptophan side chains and hydration water molecules dominate the observed dynamic stokes shift of lysozymeAsahi Fukuda, Tomotaka Oroguchi, Masayoshi NakasakoJournal of the American Chemical Society|February 24, 2011
Mechanism of the conformational change of the F1-ATPase β subunit revealed by free energy simulationsYuko Ito, Tomotaka Oroguchi, Mitsunori IkeguchiJournal of Synchrotron Radiation|April 26, 2014
Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLAYuki Sekiguchi, Tomotaka Oroguchi, Yuki Takayama, et al.Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|October 15, 2015
Classification of projection images of proteins with structural polymorphism by manifold: a simulation study for x-ray free-electron laser diffraction imagingTakashi Yoshidome, Tomotaka Oroguchi, Masayoshi Nakasako, et al.The Journal of Physical Chemistry. B|August 26, 2020
Assessment of Force Field Accuracy Using Cryogenic Electron Microscopy Data of Hyper-thermostable Glutamate DehydrogenaseTomotaka Oroguchi, Mao Oide, Taiki Wakabayashi, et al.Pageof 4