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Travis Gagie

Showing results (11-20 of 52) with videos related to

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International Symposium on String Processing and Information Retrieval : SPIRE ... : Proceedings. SPIRE (Symposium)|August 7, 2024
Space-time Trade-offs for the LCP Array of Wheeler DFAsNicola Cotumaccio, Travis Gagie, Dominik Köppl, et al.
Iscience|October 11, 2024
Building a pangenome alignment index via recursive prefix-free parsingEddie Ferro, Marco Oliva, Travis Gagie, et al.
Frontiers in Bioinformatics|July 16, 2024
Maximum-scoring path sets on pangenome graphs of constant treewidthBroňa Brejová, Travis Gagie, Eva Herencsárová, et al.
Biorxiv : the Preprint Server for Biology|November 24, 2025
Movi 2: Fast and Space-Efficient Queries on PangenomesMohsen Zakeri, Nathaniel K Brown, Travis Gagie, et al.
Bioinformatics (Oxford, England)|June 18, 2026
Movi 2: Fast and Space-Efficient Queries on PangenomesMohsen Zakeri, Nathaniel K Brown, Travis Gagie, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 18, 2022
MONI: A Pangenomic Index for Finding Maximal Exact MatchesMassimiliano Rossi, Marco Oliva, Ben Langmead, et al.
Computational and Structural Biotechnology Journal|August 11, 2021
Buffering updates enables efficient dynamic de Bruijn graphsJarno Alanko, Bahar Alipanahi, Jonathen Settle, et al.
Iscience|January 7, 2026
Run-length compressed metagenomic read classification with SMEM-finding and taggingLore Depuydt, Omar Y Ahmed, Jan Fostier, et al.
Genome Biology|May 18, 2023
SPUMONI 2: improved classification using a pangenome index of minimizer digestsOmar Y Ahmed, Massimiliano Rossi, Travis Gagie, et al.
Biorxiv : the Preprint Server for Biology|March 10, 2025
Run-length compressed metagenomic read classification with SMEM-finding and taggingLore Depuydt, Omar Y Ahmed, Jan Fostier, et al.
Pageof 6

Showing results (11-20 of 52) with videos related to

Sort By:
Pageof 6
International Symposium on String Processing and Information Retrieval : SPIRE ... : Proceedings. SPIRE (Symposium)|August 7, 2024
Space-time Trade-offs for the LCP Array of Wheeler DFAsNicola Cotumaccio, Travis Gagie, Dominik Köppl, et al.
Iscience|October 11, 2024
Building a pangenome alignment index via recursive prefix-free parsingEddie Ferro, Marco Oliva, Travis Gagie, et al.
Frontiers in Bioinformatics|July 16, 2024
Maximum-scoring path sets on pangenome graphs of constant treewidthBroňa Brejová, Travis Gagie, Eva Herencsárová, et al.
Biorxiv : the Preprint Server for Biology|November 24, 2025
Movi 2: Fast and Space-Efficient Queries on PangenomesMohsen Zakeri, Nathaniel K Brown, Travis Gagie, et al.
Bioinformatics (Oxford, England)|June 18, 2026
Movi 2: Fast and Space-Efficient Queries on PangenomesMohsen Zakeri, Nathaniel K Brown, Travis Gagie, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 18, 2022
MONI: A Pangenomic Index for Finding Maximal Exact MatchesMassimiliano Rossi, Marco Oliva, Ben Langmead, et al.
Computational and Structural Biotechnology Journal|August 11, 2021
Buffering updates enables efficient dynamic de Bruijn graphsJarno Alanko, Bahar Alipanahi, Jonathen Settle, et al.
Iscience|January 7, 2026
Run-length compressed metagenomic read classification with SMEM-finding and taggingLore Depuydt, Omar Y Ahmed, Jan Fostier, et al.
Genome Biology|May 18, 2023
SPUMONI 2: improved classification using a pangenome index of minimizer digestsOmar Y Ahmed, Massimiliano Rossi, Travis Gagie, et al.
Biorxiv : the Preprint Server for Biology|March 10, 2025
Run-length compressed metagenomic read classification with SMEM-finding and taggingLore Depuydt, Omar Y Ahmed, Jan Fostier, et al.
Pageof 6