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RNA Biology|February 15, 2021
Deciphering nucleotide modification-induced structure and stability changesTravis Hurst, Shi-Jie ChenThe Journal of Physical Chemistry. B|January 26, 2021
Sieving RNA 3D Structures with SHAPE and Evaluating Mechanisms Driving Sequence-Dependent Reactivity BiasTravis Hurst, Shi-Jie ChenProceedings of the National Academy of Sciences of the United States of America|April 17, 2019
Unified energetics analysis unravels SpCas9 cleavage activity for optimal gRNA designDong Zhang, Travis Hurst, Dongsheng Duan, et al.The Journal of Physical Chemistry. B|April 17, 2018
Quantitative Understanding of SHAPE Mechanism from RNA Structure and Dynamics AnalysisTravis Hurst, Xiaojun Xu, Peinan Zhao, et al.Communications in Information and Systems|August 6, 2021
A Bayes-inspired theory for optimally building an efficient coarse-grained folding force fieldTravis Hurst, Dong Zhang, Yuanzhe Zhou, et al.Frontiers in Molecular Biosciences|August 16, 2021
SHAPER: A Web Server for Fast and Accurate SHAPE Reactivity PredictionYuanzhe Zhou, Jun Li, Travis Hurst, et al.Annual Review of Biophysics|June 25, 2008
RNA folding: conformational statistics, folding kinetics, and ion electrostaticsShi-Jie ChenThe Journal of Physical Chemistry. B|May 25, 2013
Quantifying Coulombic and solvent polarization-mediated forces between DNA helicesZhaojian He, Shi-Jie ChenJournal of Chemical Theory and Computation|March 3, 2018
IsRNA: An Iterative Simulated Reference State Approach to Modeling Correlated Interactions in RNA FoldingDong Zhang, Shi-Jie ChenNucleic Acids Research|May 20, 2006
Predicting RNA pseudoknot folding thermodynamicsSong Cao, Shi-Jie ChenPageof 18