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Annual Review of Biophysics|March 17, 2017
Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small MoleculesLi-Zhen Sun, Dong Zhang, Shi-Jie ChenFrontiers in Molecular Biosciences|January 10, 2018
Theory Meets Experiment: Metal Ion Effects in HCV Genomic RNA Kissing Complex FormationLi-Zhen Sun, Xiao Heng, Shi-Jie ChenThe Journal of Physical Chemistry. B|July 10, 2018
Predicting Cotranscriptional Folding Kinetics For RiboswitchTing-Ting Sun, Chenhan Zhao, Shi-Jie ChenBioinformatics (Oxford, England)|June 27, 2022
Vfold-Pipeline: a web server for RNA 3D structure prediction from sequencesJun Li, Sicheng Zhang, Dong Zhang, et al.Biophysical Journal|September 19, 2020
Modeling Loop Composition and Ion Concentration Effects in RNA Hairpin Folding StabilityChenhan Zhao, Dong Zhang, Yangwei Jiang, et al.RNA (New York, N.Y.)|January 21, 2022
VfoldMCPX: predicting multistrand RNA complexesSicheng Zhang, Yi Cheng, Peixuan Guo, et al.Proteins|June 9, 2025
Enhancing RNA 3D Structure Prediction in CASP16: Integrating Physics-Based Modeling With Machine Learning for Improved PredictionsSicheng Zhang, Jun Li, Yuanzhe Zhou, et al.Biorxiv : the Preprint Server for Biology|May 15, 2024
Machine learning-inferred and energy landscape-guided analyses reveal kinetic determinants of CRISPR/Cas9 gene editingLei Jin, Risi Liyanage, Dongsheng Duan, et al.Journal of Chemical Theory and Computation|February 8, 2022
Landscape Zooming toward the Prediction of RNA Cotranscriptional FoldingXiaojun Xu, Lei Jin, Liangxu Xie, et al.Zhonghua Liu Xing Bing Xue Za Zhi = Zhonghua Liuxingbingxue Zazhi|June 21, 2003
[Quantitative study by grey system on the latent period of lung cancer induced by air pollutants]Shi-jie Chen, Xiu-yang Li, Lian-fang ZhouPageof 18