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The Journal of Physical Chemistry. B|October 5, 2010
Folding kinetics for the conformational switch between alternative RNA structuresSong Cao, Boris Fürtig, Harald Schwalbe, et al.
The Journal of Physical Chemistry. B|September 2, 2021
Vfold2D-MC: A Physics-Based Hybrid Model for Predicting RNA Secondary Structure FoldingYi Cheng, Sicheng Zhang, Xiaojun Xu, et al.
The Journal of Biological Chemistry|November 28, 2024
mRNA vaccine sequence and structure design and optimization: Advances and challengesLei Jin, Yuanzhe Zhou, Sicheng Zhang, et al.
RNA (New York, N.Y.)|April 29, 2017
MCTBI: a web server for predicting metal ion effects in RNA structuresLi-Zhen Sun, Jing-Xiang Zhang, Shi-Jie Chen
The Journal of Physical Chemistry. B|August 5, 2016
Predicting Molecular Crowding Effects in Ion-RNA InteractionsTao Yu, Yuhong Zhu, Zhaojian He, et al.
Journal of Chemical Theory and Computation|October 23, 2020
RLDOCK: A New Method for Predicting RNA-Ligand InteractionsLi-Zhen Sun, Yangwei Jiang, Yuanzhe Zhou, et al.
The Journal of Physical Chemistry. B|August 8, 2017
Predicting Ion Effects in an RNA Conformational EquilibriumLi-Zhen Sun, Clayton Kranawetter, Xiao Heng, et al.
Methods (San Diego, Calif.)|March 15, 2016
Structural computational modeling of RNA aptamersXiaojun Xu, David D Dickey, Shi-Jie Chen, et al.
RNA (New York, N.Y.)|July 30, 2011
A conserved RNA pseudoknot in a putative molecular switch domain of the 3'-untranslated region of coronaviruses is only marginally stableSuzanne N Stammler, Song Cao, Shi-Jie Chen, et al.
Free Radical Biology & Medicine|June 8, 2024
Modeling the reactive oxygen species (ROS) wave in Chlamydomonas reinhardtii coloniesYuanzhe Zhou, Yosef Fichman, Sicheng Zhang, et al.
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