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Methods (San Diego, Calif.)|February 7, 2021
RLDOCK method for predicting RNA-small molecule binding modesYangwei Jiang, Shi-Jie ChenQRB Discovery|June 9, 2023
Graph deep learning locates magnesium ions in RNAYuanzhe Zhou, Shi-Jie ChenMethods in Molecular Biology (Clifton, N.J.)|May 14, 2015
A Method to Predict the 3D Structure of an RNA ScaffoldXiaojun Xu, Shi-Jie ChenNucleic Acids Research|June 4, 2020
Topological constraints of RNA pseudoknotted and loop-kissing motifs: applications to three-dimensional structure predictionXiaojun Xu, Shi-Jie ChenJournal of the American Chemical Society|July 7, 2012
Kinetic mechanism of conformational switch between bistable RNA hairpinsXiaojun Xu, Shi-Jie ChenThe Journal of Chemical Physics|April 20, 2005
Statistical thermodynamics for chain molecules with simple RNA tertiary contactsZoia Kopeikin, Shi-Jie ChenJournal of Molecular Biology|January 18, 2006
Free energy landscapes of RNA/RNA complexes: with applications to snRNA complexes in spliceosomesSong Cao, Shi-Jie ChenJournal of Molecular Biology|February 6, 2007
Biphasic folding kinetics of RNA pseudoknots and telomerase RNA activitySong Cao, Shi-Jie ChenPageof 18