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Proteins|August 24, 2023
Advancing RNA 3D structure prediction: Exploring hierarchical and hybrid approaches in CASP15Jun Li, Sicheng Zhang, Shi-Jie ChenProceedings of the National Academy of Sciences of the United States of America|December 25, 2015
Understanding the kinetic mechanism of RNA single base pair formationXiaojun Xu, Tao Yu, Shi-Jie ChenJournal of Chemical Theory and Computation|September 23, 2025
RLDOCKScore: A Scoring Function for RNA-Ligand Docking and Small Molecule Virtual ScreeningYuanzhe Zhou, Wenfei Li, Shi-Jie ChenBiophysical Journal|February 1, 2024
Machine learning in RNA structure prediction: Advances and challengesSicheng Zhang, Jun Li, Shi-Jie ChenExpert Opinion on Drug Discovery|February 1, 2020
Duchenne muscular dystrophy animal models for high-throughput drug discovery and precision medicineNalinda B Wasala, Shi-Jie Chen, Dongsheng DuanRNA (New York, N.Y.)|January 27, 2010
Predicting loop-helix tertiary structural contacts in RNA pseudoknotsSong Cao, David P Giedroc, Shi-Jie ChenACS Omega|August 29, 2019
Predicting Monovalent Ion Correlation Effects in Nucleic AcidsLi-Zhen Sun, Yuanzhe Zhou, Shi-Jie ChenBiophysical Journal|January 21, 2010
Salt-dependent folding energy landscape of RNA three-way junctionGengsheng Chen, Zhi-Jie Tan, Shi-Jie ChenBiophysical Journal|April 23, 2010
Predicting secondary structural folding kinetics for nucleic acidsPeinan Zhao, Wen-Bing Zhang, Shi-Jie ChenCommunications in Information and Systems|November 11, 2024
smFRET-assisted RNA structure predictionJun Li, Nils G Walter, Shi-Jie ChenPageof 18