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Metabolites|January 5, 2018
Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux AnalysisTyler W H Backman, David Ando, Jahnavi Singh, et al.Bioinformatics (Oxford, England)|July 1, 2008
A maximum common substructure-based algorithm for searching and predicting drug-like compoundsYiqun Cao, Tao Jiang, Thomas GirkeBioinformatics (Oxford, England)|June 17, 2014
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related referencesErgude Bao, Tao Jiang, Thomas GirkeOncotarget|May 29, 2018
Global isoform-specific transcript alterations and deregulated networks in clear cell renal cell carcinomaMichael J Hamilton, Thomas Girke, Ernest MartinezNucleic Acids Research|August 4, 2005
Identification and characterization of endogenous small interfering RNAs from riceRamanjulu Sunkar, Thomas Girke, Jian-Kang ZhuBioinformatics (Oxford, England)|June 25, 2013
Differential gene expression analysis using coexpression and RNA-Seq dataEi-Wen Yang, Thomas Girke, Tao JiangBMC Bioinformatics|April 28, 2010
Predicting conserved protein motifs with Sub-HMMsKevin Horan, Christian R Shelton, Thomas GirkeBioinformatics (Oxford, England)|August 4, 2011
SEED: efficient clustering of next-generation sequencesErgude Bao, Tao Jiang, Isgouhi Kaloshian, et al.NAR Genomics and Bioinformatics|April 6, 2026
systemPipeR: a multipurpose workflow management system for reproducible data analysisLe Zhang, Daniela Cassol, Brendan Gongol, et al.Journal of Virology|September 30, 2016
Acute Simian Varicella Virus Infection Causes Robust and Sustained Changes in Gene Expression in the Sensory GangliaNicole Arnold, Thomas Girke, Suhas Sureshchandra, et al.Pageof 9