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BMC Systems Biology|February 26, 2014
Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout dataTzu-Hsien Yang, Wei-Sheng WuBMC Systems Biology|August 18, 2012
Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip dataTzu-Hsien Yang, Wei-Sheng WuBMC Systems Biology|December 19, 2014
cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in DrosophilaTzu-Hsien Yang, Chung-Ching Wang, Po-Cheng Hung, et al.BMC Genomics|December 19, 2014
The Yeast Nucleosome Atlas (YNA) database: an integrative gene mining platform for studying chromatin structure and its regulation in yeastPo-Cheng Hung, Tzu-Hsien Yang, Hung-Jiun Liaw, et al.Database : the Journal of Biological Databases and Curation|March 11, 2014
YTRP: a repository for yeast transcriptional regulatory pathwaysTzu-Hsien Yang, Chung-Ching Wang, Yu-Chao Wang, et al.Plos One|January 4, 2014
Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promotersFu-Jou Lai, Chia-Chun Chiu, Tzu-Hsien Yang, et al.BMC Bioinformatics|October 17, 2021
Identifying piRNA targets on mRNAs in C. elegans using a deep multi-head attention networkTzu-Hsien Yang, Sheng-Cian Shiue, Kuan-Yu Chen, et al.Journal of Chemical Information and Modeling|April 22, 2024
DEBFold: Computational Identification of RNA Secondary Structures for Sequences across Structural Families Using Deep LearningTzu-Hsien YangBMC Bioinformatics|December 29, 2019
Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeastTzu-Hsien YangIEEE/ACM Transactions on Computational Biology and Bioinformatics|May 20, 2021
An Aggregation Method to Identify the RNA Meta-Stable Secondary Structure and its Functionally Interpretable Structure EnsembleTzu-Hsien YangPageof 12