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Journal of the American Chemical Society|January 19, 2006
NMR imino proton exchange experiments on duplex DNA primarily monitor the opening of purine basesU Deva Priyakumar, Alexander D MackerellJournal of Chemical Theory and Computation|December 3, 2015
Base Flipping in a GCGC Containing DNA Dodecamer: A Comparative Study of the Performance of the Nucleic Acid Force Fields, CHARMM, AMBER, and BMSU Deva Priyakumar, Alexander D MacKerellThe Journal of Physical Chemistry. B|January 17, 2008
Atomic detail investigation of the structure and dynamics of DNA.RNA hybrids: a molecular dynamics studyU Deva Priyakumar, Alexander D MackerellJournal of Molecular Biology|December 23, 2009
Role of the adenine ligand on the stabilization of the secondary and tertiary interactions in the adenine riboswitchU Deva Priyakumar, Alexander D MacKerellBiochemistry|February 3, 2005
Conformational determinants of tandem GU mismatches in RNA: insights from molecular dynamics simulations and quantum mechanical calculationsYongping Pan, U Deva Priyakumar, Alexander D MacKerellJournal of the American Chemical Society|November 19, 2009
Urea destabilizes RNA by forming stacking interactions and multiple hydrogen bonds with nucleic acid basesU Deva Priyakumar, Changbong Hyeon, D Thirumalai, et al.Journal of Computational Chemistry|April 7, 2011
Impact of 2'-hydroxyl sampling on the conformational properties of RNA: update of the CHARMM all-atom additive force field for RNAElizabeth J Denning, U Deva Priyakumar, Lennart Nilsson, et al.The Journal of Physical Chemistry. B|February 11, 2015
Dispersion interactions between urea and nucleobases contribute to the destabilization of RNA by urea in aqueous solutionKoushik Kasavajhala, Swetha Bikkina, Indrajit Patil, et al.BMC Cancer|January 12, 2011
Characterization of ERK docking domain inhibitors that induce apoptosis by targeting Rsk-1 and caspase-9Sarice R Boston, Rahul Deshmukh, Scott Strome, et al.The Journal of Physical Chemistry. B|July 10, 2010
Atomistic details of the ligand discrimination mechanism of S(MK)/SAM-III riboswitchU Deva PriyakumarPageof 49