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Biorxiv : the Preprint Server for Biology|January 20, 2025
Inferring resource competition in microbial communities from time seriesXiaowen Chen, Kyle Crocker, Seppe Kuehn, et al.Molecular Biology and Evolution|June 19, 2019
Fierce Selection and Interference in B-Cell Repertoire Response to Chronic HIV-1Armita Nourmohammad, Jakub Otwinowski, Marta Łuksza, et al.Physical Review. E|May 20, 2022
Renormalization group approach to connect discrete- and continuous-time descriptions of Gaussian processesFederica Ferretti, Victor Chardès, Thierry Mora, et al.Vaccines|January 8, 2020
Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination StrategiesChristoph Kreer, Henning Gruell, Thierry Mora, et al.Plos Computational Biology|December 28, 2018
Active degradation of MarA controls coordination of its downstream targetsNicholas A Rossi, Thierry Mora, Aleksandra M Walczak, et al.Nucleic Acids Research|August 28, 2025
Optimal sequencing depth for measuring the concentrations of molecular barcodesTommaso Ocari, Emilia A Zin, Muge Tekinsoy, et al.Bioinformatics (Oxford, England)|January 19, 2019
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifsZachary Sethna, Yuval Elhanati, Curtis G Callan, et al.Proceedings of the National Academy of Sciences of the United States of America|June 20, 2014
Quantifying selection in immune receptor repertoiresYuval Elhanati, Anand Murugan, Curtis G Callan, et al.Proceedings of the National Academy of Sciences of the United States of America|June 5, 2024
TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopesBarthelemy Meynard-Piganeau, Christoph Feinauer, Martin Weigt, et al.Immunological Reviews|June 27, 2018
Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombinationYuval Elhanati, Zachary Sethna, Curtis G Callan, et al.Pageof 16