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BMC Systems Biology|November 22, 2017
Inferring gene regulatory networks from single-cell data: a mechanistic approachUlysse Herbach, Arnaud Bonnaffoux, Thibault Espinasse, et al.
Plos Computational Biology|March 27, 2023
One model fits all: Combining inference and simulation of gene regulatory networksElias Ventre, Ulysse Herbach, Thibault Espinasse, et al.
Plos One|March 28, 2024
Stochastic modeling of a gene regulatory network driving B cell development in germinal centersAlexey Koshkin, Ulysse Herbach, María Rodríguez Martínez, et al.
F1000Research|August 7, 2023
Single-cell transcriptional uncertainty landscape of cell differentiationNan Papili Gao, Olivier Gandrillon, András Páldi, et al.
NPJ Systems Biology and Applications|May 21, 2026
Cell trajectory inference based on schrödinger problem and a mechanistic model of stochastic gene expressionClémence Fournié, Elias Ventre, Ulysse Herbach, et al.
BMC Bioinformatics|May 4, 2019
WASABI: a dynamic iterative framework for gene regulatory network inferenceArnaud Bonnaffoux, Ulysse Herbach, Angélique Richard, et al.
Plos Biology|December 28, 2016
Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation ProcessAngélique Richard, Loïs Boullu, Ulysse Herbach, et al.
Trials|November 28, 2023
Effects of a physical activity and endometriosis-based education program delivered by videoconference on endometriosis symptoms: the CRESCENDO program (inCRease physical Exercise and Sport to Combat ENDOmetriosis) protocol studyGéraldine Escriva-Boulley, Charles-André Philip, Sophie Warembourg, et al.
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