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Biorxiv : the Preprint Server for Biology|March 18, 2024
Maximum Likelihood Inference of Time-scaled Cell Lineage Trees with Mixed-type Missing DataUyen Mai, Gillian Chu, Benjamin J RaphaelGenome Biology|July 3, 2025
Maximum likelihood inference of time-scaled cell lineage trees with mixed-type missing data using LAMLGillian Chu, Uyen Mai, Henri Schmidt, et al.Bioinformatics (Oxford, England)|June 28, 2024
Maximum likelihood phylogeographic inference of cell motility and cell division from spatial lineage tracing dataUyen Mai, Gary Hu, Benjamin J RaphaelBioinformatics (Oxford, England)|July 7, 2026
LAML-Pro: joint maximum likelihood inference of cell genotypes and cell lineage treesGillian Chu, Henri Schmidt, Benjamin J RaphaelBiorxiv : the Preprint Server for Biology|April 10, 2026
LAML-Pro: Joint Maximum Likelihood Inference of Cell Genotypes and Cell Lineage TreesGillian Chu, Henri Schmidt, Benjamin J RaphaelMolecular Biology and Evolution|September 4, 2020
Log Transformation Improves Dating of PhylogeniesUyen Mai, Siavash MirarabBMC Genomics|May 11, 2018
TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic treesUyen Mai, Siavash MirarabBioinformatics (Oxford, England)|January 3, 2022
Completing gene trees without species trees in sub-quadratic timeUyen Mai, Siavash MirarabPlos One|August 12, 2017
Minimum variance rooting of phylogenetic trees and implications for species tree reconstructionUyen Mai, Erfan Sayyari, Siavash MirarabSystematic Biology|July 6, 2024
Expectation-Maximization enables Phylogenetic Dating under a Categorical Rate ModelUyen Mai, Eduardo Charvel, Siavash MirarabPageof 19