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Plos Computational Biology|April 16, 2024
Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset datesAdrian Lison, Sam Abbott, Jana Huisman, et al.Molecular Biology and Evolution|March 26, 2026
Age-dependent phylodynamics with application to single-cell lineage treesNicola Mulberry, Julia Pilarski, Jana Dinger, et al.Proceedings of the National Academy of Sciences of the United States of America|December 19, 2012
Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)Tanja Stadler, Denise Kühnert, Sebastian Bonhoeffer, et al.Genetics|December 21, 2014
Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic modelsAlex Popinga, Tim Vaughan, Tanja Stadler, et al.Plos Computational Biology|December 5, 2014
Bayesian inference of sampled ancestor trees for epidemiology and fossil calibrationAlexandra Gavryushkina, David Welch, Tanja Stadler, et al.Journal of Theoretical Biology|December 7, 2017
On the statistical analysis of single cell lineage treesTanja Stadler, Stavroula Skylaki, Konstantinos D Kokkaliaris, et al.Advances in Experimental Medicine and Biology|November 9, 2017
Mathematical Models for the Epidemiology and Evolution of Mycobacterium tuberculosisJūlija Pečerska, James Wood, Mark M Tanaka, et al.Systematic Biology|August 26, 2011
Branch lengths on birth-death trees and the expected loss of phylogenetic diversityArne Mooers, Olivier Gascuel, Tanja Stadler, et al.Genome Biology and Evolution|October 12, 2013
On the need for mechanistic models in computational genomics and metagenomicsDavid A Liberles, Ashley I Teufel, Liang Liu, et al.Journal of Theoretical Biology|December 24, 2019
The probability distribution of the reconstructed phylogenetic tree with occurrence dataAnkit Gupta, Marc Manceau, Timothy Vaughan, et al.Pageof 20