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Journal of Computer-Aided Molecular Design|August 26, 2017
Combining self- and cross-docking as benchmark tools: the performance of DockBench in the D3R Grand Challenge 2Veronica Salmaso, Mattia Sturlese, Alberto Cuzzolin, et al.
Journal of Computer-Aided Molecular Design|September 18, 2016
DockBench as docking selector tool: the lesson learned from D3R Grand Challenge 2015Veronica Salmaso, Mattia Sturlese, Alberto Cuzzolin, et al.
Structure (London, England : 1993)|March 21, 2017
Exploring Protein-Peptide Recognition Pathways Using a Supervised Molecular Dynamics ApproachVeronica Salmaso, Mattia Sturlese, Alberto Cuzzolin, et al.
Chemmedchem|December 2, 2017
AquaMMapS: An Alternative Tool to Monitor the Role of Water Molecules During Protein-Ligand AssociationAlberto Cuzzolin, Giuseppe Deganutti, Veronica Salmaso, et al.
Journal of Chemical Information and Modeling|March 29, 2016
Deciphering the Complexity of Ligand-Protein Recognition Pathways Using Supervised Molecular Dynamics (SuMD) SimulationsAlberto Cuzzolin, Mattia Sturlese, Giuseppe Deganutti, et al.
Molecular Informatics|August 23, 2016
New Trends in Inspecting GPCR-ligand Recognition Process: the Contribution of the Molecular Modeling Section (MMS) at the University of PadovaAntonella Ciancetta, Alberto Cuzzolin, Giuseppe Deganutti, et al.
Methods in Molecular Biology (Clifton, N.J.)|July 25, 2018
Supervised Molecular Dynamics (SuMD) Approaches in Drug DesignDavide Sabbadin, Veronica Salmaso, Mattia Sturlese, et al.
Molecules (Basel, Switzerland)|June 3, 2015
DockBench: An Integrated Informatic Platform Bridging the Gap between the Robust Validation of Docking Protocols and Virtual Screening SimulationsAlberto Cuzzolin, Mattia Sturlese, Ivana Malvacio, et al.
International Journal of Molecular Sciences|July 24, 2019
Can We Still Trust Docking Results? An Extension of the Applicability of DockBench on PDBbind DatabaseGiovanni Bolcato, Alberto Cuzzolin, Maicol Bissaro, et al.
International Journal of Molecular Sciences|February 25, 2023
Thermal Titration Molecular Dynamics (TTMD): Not Your Usual Post-Docking RefinementSilvia Menin, Matteo Pavan, Veronica Salmaso, et al.
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