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Victor Ovchinnikov

Showing results (1-10 of 29) with videos related to

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The Journal of Physical Chemistry. B|September 27, 2023
Free Energy Simulations of Receptor-Binding Domain Opening of the SARS-CoV-2 Spike Indicate a Barrierless Transition with Slow Conformational MotionsVictor Ovchinnikov, Martin Karplus
Frontiers in Immunology|April 4, 2022
A Coarse-Grained Model of Affinity Maturation Indicates the Importance of B-Cell Receptor Avidity in Epitope SubdominanceVictor Ovchinnikov, Martin Karplus
Journal of Computational Chemistry|October 15, 2024
High-throughput molecular simulations of SARS-CoV-2 receptor binding domain mutants quantify correlations between dynamic fluctuations and protein expressionVictor Ovchinnikov, Martin Karplus
The Journal of Physical Chemistry. B|March 14, 2012
Analysis and elimination of a bias in targeted molecular dynamics simulations of conformational transitions: application to calmodulinVictor Ovchinnikov, Martin Karplus
Antibodies (Basel, Switzerland)|January 23, 2025
Phenomenological Modeling of Antibody Response from Vaccine Strain CompositionVictor Ovchinnikov, Martin Karplus
The Journal of Chemical Physics|May 10, 2014
Investigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string methodVictor Ovchinnikov, Martin Karplus
The Journal of Chemical Physics|October 2, 2020
A restrained locally enhanced sampling method (RLES) for finding free energy minima in complex systemsVictor Ovchinnikov, Simone Conti, Martin Karplus
The Journal of Physical Chemistry. B|June 26, 2023
Molecular Simulations of Conformational Transitions within the Insulin Receptor Kinase Reveal Consensus Features in a Multistep Activation PathwayKwangho Nam, Yunwen Tao, Victor Ovchinnikov
The Journal of Physical Chemistry. B|December 28, 2012
A simplified confinement method for calculating absolute free energies and free energy and entropy differencesVictor Ovchinnikov, Marco Cecchini, Martin Karplus
Methods in Molecular Biology (Clifton, N.J.)|March 17, 2022
Molecular Simulation of Stapled PeptidesVictor Ovchinnikov, Aravinda Munasinghe, Martin Karplus
Pageof 3

Showing results (1-10 of 29) with videos related to

Sort By:
Pageof 3
The Journal of Physical Chemistry. B|September 27, 2023
Free Energy Simulations of Receptor-Binding Domain Opening of the SARS-CoV-2 Spike Indicate a Barrierless Transition with Slow Conformational MotionsVictor Ovchinnikov, Martin Karplus
Frontiers in Immunology|April 4, 2022
A Coarse-Grained Model of Affinity Maturation Indicates the Importance of B-Cell Receptor Avidity in Epitope SubdominanceVictor Ovchinnikov, Martin Karplus
Journal of Computational Chemistry|October 15, 2024
High-throughput molecular simulations of SARS-CoV-2 receptor binding domain mutants quantify correlations between dynamic fluctuations and protein expressionVictor Ovchinnikov, Martin Karplus
The Journal of Physical Chemistry. B|March 14, 2012
Analysis and elimination of a bias in targeted molecular dynamics simulations of conformational transitions: application to calmodulinVictor Ovchinnikov, Martin Karplus
Antibodies (Basel, Switzerland)|January 23, 2025
Phenomenological Modeling of Antibody Response from Vaccine Strain CompositionVictor Ovchinnikov, Martin Karplus
The Journal of Chemical Physics|May 10, 2014
Investigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string methodVictor Ovchinnikov, Martin Karplus
The Journal of Chemical Physics|October 2, 2020
A restrained locally enhanced sampling method (RLES) for finding free energy minima in complex systemsVictor Ovchinnikov, Simone Conti, Martin Karplus
The Journal of Physical Chemistry. B|June 26, 2023
Molecular Simulations of Conformational Transitions within the Insulin Receptor Kinase Reveal Consensus Features in a Multistep Activation PathwayKwangho Nam, Yunwen Tao, Victor Ovchinnikov
The Journal of Physical Chemistry. B|December 28, 2012
A simplified confinement method for calculating absolute free energies and free energy and entropy differencesVictor Ovchinnikov, Marco Cecchini, Martin Karplus
Methods in Molecular Biology (Clifton, N.J.)|March 17, 2022
Molecular Simulation of Stapled PeptidesVictor Ovchinnikov, Aravinda Munasinghe, Martin Karplus
Pageof 3