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Current Opinion in Structural Biology|July 15, 2022
Uncovering the statistical physics of 3D chromosomal organization using data-driven modelingVinícius G Contessoto, Ryan R Cheng, José N Onuchic
Nucleic Acids Research|April 14, 2022
Shaping the genome via lengthwise compaction, phase separation, and lamina adhesionSumitabha Brahmachari, Vinícius G Contessoto, Michele Di Pierro, et al.
Methods in Molecular Biology (Clifton, N.J.)|November 30, 2021
Coarse-Grained Simulations of Protein Folding: Bridging Theory and ExperimentsVinícius G Contessoto, Vinícius M de Oliveira, Vitor B P Leite
Protein Science : a Publication of the Protein Society|October 11, 2025
Mapping the energy landscape of a fold-switching protein MAD2Ander F Pereira, Vinícius G Contessoto, Leandro Martínez, et al.
Structural Dynamics (Melville, N.Y.)|November 28, 2025
Sequence-based calculation of local energetic frustration in proteinsAdam M Kuhn, Vinícius G Contessoto, José N Onuchic, et al.
Journal of Molecular Biology|November 8, 2020
A Scalable Computational Approach for Simulating Complexes of Multiple ChromosomesAntonio B Oliveira Junior, Vinícius G Contessoto, Matheus F Mello, et al.
The Journal of Chemical Physics|March 19, 2025
The synergy between compartmentalization and motorization in chromatin architectureRonaldo J Oliveira, Antonio B Oliveira Junior, Vinícius G Contessoto, et al.
Proceedings of the National Academy of Sciences of the United States of America|March 17, 2026
Exploring the energy landscape of bacterial chromosome segregationSumitabha Brahmachari, Antonio B Oliveira, Matheus F Mello, et al.
Plos Computational Biology|December 3, 2025
Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenomeEsteban Dodero-Rojas, Angel Mendieta, Yao Fehlis, et al.
The Journal of Physical Chemistry. B|April 22, 2021
Improving the Thermostability of Xylanase A from <i>Bacillus subtilis</i> by Combining Bioinformatics and Electrostatic Interactions OptimizationKhoa Ngo, Fernando Bruno da Silva, Vitor B P Leite, et al.
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