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NAR Genomics and Bioinformatics|July 18, 2025
ganon2: up-to-date and scalable metagenomics analysisVitor C Piro, Knut ReinertBioinformatics (Oxford, England)|July 14, 2020
ganon: precise metagenomics classification against large and up-to-date sets of reference sequencesVitor C Piro, Temesgen H Dadi, Enrico Seiler, et al.Bioinformatics (Oxford, England)|November 14, 2018
DREAM-Yara: an exact read mapper for very large databases with short update timeTemesgen Hailemariam Dadi, Enrico Siragusa, Vitor C Piro, et al.Gigascience|March 30, 2023
Contamination detection and microbiome exploration with GRIMERVitor C Piro, Bernhard Y RenardMethods in Molecular Biology (Clifton, N.J.)|December 17, 2009
OpenMS and TOPP: open source software for LC-MS data analysisKnut Reinert, Oliver KohlbacherBioinformatics (Oxford, England)|January 25, 2024
A simple refined DNA minimizer operator enables 2-fold faster computationChenxu Pan, Knut ReinertBioinformatics (Oxford, England)|October 6, 2014
LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networksJialu Hu, Knut ReinertGenome Biology|June 13, 2024
Leaf: an ultrafast filter for population-scale long-read SV detectionChenxu Pan, Knut ReinertAlgorithms for Molecular Biology : AMB|December 11, 2025
Engineering rank queries on bit vectors and stringsSimon Gene Gottlieb, Knut ReinertNAR Genomics and Bioinformatics|March 19, 2025
SeArcH schemes for Approximate stRing mAtchingSimon Gene Gottlieb, Knut ReinertPageof 12