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Frontiers in Molecular Biosciences
|
December 30, 2021
Improving Small-Molecule Force Field Parameters in Ligand Binding Studies
Stefano Raniolo, Vittorio Limongelli
Nature Protocols
|
August 21, 2020
Ligand binding free-energy calculations with funnel metadynamics
Stefano Raniolo, Vittorio Limongelli
Journal of Chemical Theory and Computation
|
May 27, 2016
The Free Energy Landscape of GABA Binding to a Pentameric Ligand-Gated Ion Channel and Its Disruption by Mutations
Federico Comitani, Vittorio Limongelli, Carla Molteni
Scientific Reports
|
February 13, 2015
Energetics and structural characterization of the large-scale functional motion of adenylate kinase
Elena Formoso, Vittorio Limongelli, Michele Parrinello
Journal of Chemical Theory and Computation
|
September 1, 2023
Perspectives on Ligand/Protein Binding Kinetics Simulations: Force Fields, Machine Learning, Sampling, and User-Friendliness
Paolo Conflitti, Stefano Raniolo, Vittorio Limongelli
Proceedings of the National Academy of Sciences of the United States of America
|
April 5, 2013
Funnel metadynamics as accurate binding free-energy method
Vittorio Limongelli, Massimiliano Bonomi, Michele Parrinello
The Journal of Chemical Physics
|
August 19, 2025
HEroBM: A deep equivariant graph neural network for high-fidelity backmapping from coarse-grained to all-atom structures
Daniele Angioletti, Stefano Raniolo, Vittorio Limongelli
Journal of Chemical Theory and Computation
|
December 13, 2018
Accelerating the Calculation of Protein-Ligand Binding Free Energy and Residence Times Using Dynamically Optimized Collective Variables
Z Faidon Brotzakis, Vittorio Limongelli, Michele Parrinello
Frontiers in Molecular Biosciences
|
May 24, 2021
Drug Repurposing on G Protein-Coupled Receptors Using a Computational Profiling Approach
Alessandra de Felice, Simone Aureli, Vittorio Limongelli
Journal of the American Chemical Society
|
July 27, 2016
Conformational Changes in the Epidermal Growth Factor Receptor: Role of the Transmembrane Domain Investigated by Coarse-Grained MetaDynamics Free Energy Calculations
Mickaël Lelimousin, Vittorio Limongelli, Mark S P Sansom
Page
of 9
Search research articles
Search
Showing results (1-10 of 82) with videos related to
Sort By:
Page
of 9
Frontiers in Molecular Biosciences
|
December 30, 2021
Improving Small-Molecule Force Field Parameters in Ligand Binding Studies
Stefano Raniolo, Vittorio Limongelli
Nature Protocols
|
August 21, 2020
Ligand binding free-energy calculations with funnel metadynamics
Stefano Raniolo, Vittorio Limongelli
Journal of Chemical Theory and Computation
|
May 27, 2016
The Free Energy Landscape of GABA Binding to a Pentameric Ligand-Gated Ion Channel and Its Disruption by Mutations
Federico Comitani, Vittorio Limongelli, Carla Molteni
Scientific Reports
|
February 13, 2015
Energetics and structural characterization of the large-scale functional motion of adenylate kinase
Elena Formoso, Vittorio Limongelli, Michele Parrinello
Journal of Chemical Theory and Computation
|
September 1, 2023
Perspectives on Ligand/Protein Binding Kinetics Simulations: Force Fields, Machine Learning, Sampling, and User-Friendliness
Paolo Conflitti, Stefano Raniolo, Vittorio Limongelli
Proceedings of the National Academy of Sciences of the United States of America
|
April 5, 2013
Funnel metadynamics as accurate binding free-energy method
Vittorio Limongelli, Massimiliano Bonomi, Michele Parrinello
The Journal of Chemical Physics
|
August 19, 2025
HEroBM: A deep equivariant graph neural network for high-fidelity backmapping from coarse-grained to all-atom structures
Daniele Angioletti, Stefano Raniolo, Vittorio Limongelli
Journal of Chemical Theory and Computation
|
December 13, 2018
Accelerating the Calculation of Protein-Ligand Binding Free Energy and Residence Times Using Dynamically Optimized Collective Variables
Z Faidon Brotzakis, Vittorio Limongelli, Michele Parrinello
Frontiers in Molecular Biosciences
|
May 24, 2021
Drug Repurposing on G Protein-Coupled Receptors Using a Computational Profiling Approach
Alessandra de Felice, Simone Aureli, Vittorio Limongelli
Journal of the American Chemical Society
|
July 27, 2016
Conformational Changes in the Epidermal Growth Factor Receptor: Role of the Transmembrane Domain Investigated by Coarse-Grained MetaDynamics Free Energy Calculations
Mickaël Lelimousin, Vittorio Limongelli, Mark S P Sansom
Page
of 9