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Bioinformatics (Oxford, England)|August 31, 2018
RepeatCraft: a meta-pipeline for repetitive element de-fragmentation and annotationWai Yee Wong, Oleg SimakovFrontiers in Genetics|April 4, 2022
Repeat Age Decomposition Informs an Ancient Set of Repeats Associated With Coleoid Cephalopod DivergenceAlba Marino, Alena Kizenko, Wai Yee Wong, et al.Developmental Biology|November 29, 2016
Independent evolution of genomic characters during major metazoan transitionsOleg Simakov, Takeshi KawashimaProceedings of the National Academy of Sciences of the United States of America|October 30, 2019
Expansion of a single transposable element family is associated with genome-size increase and radiation in the genus HydraWai Yee Wong, Oleg Simakov, Diane M Bridge, et al.Annual Review of Animal Biosciences|December 10, 2019
Cephalopod Biology: At the Intersection Between Genomic and Organismal NoveltiesCaroline B Albertin, Oleg SimakovEvodevo|May 3, 2025
The application of irreversible genomic states to define and trace ancient cell type homologiesOleg Simakov, Günter P WagnerAnnual Review of Animal Biosciences|February 19, 2026
Topological Approaches in Animal Comparative GenomicsDarrin T Schultz, Oleg SimakovBriefings in Functional Genomics|October 10, 2023
Emerging questions on the mechanisms and dynamics of 3D genome evolution in spiraliansThea F Rogers, Oleg SimakovBioessays : News and Reviews in Molecular, Cellular and Developmental Biology|March 26, 2018
The Diversification of Early Emerging Metazoans: A Window into the Evolution of Animal MulticellularityRoger Revilla-I-Domingo, Oleg SimakovBriefings in Functional Genomics|November 23, 2012
Linking micro- and macro-evolution at the cell type level: a view from the lophotrochozoan Platynereis dumeriliiOleg Simakov, Tomas A Larsson, Detlev ArendtPageof 12