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The Journal of Physical Chemistry. B|May 2, 2012
AWSEM-MD: protein structure prediction using coarse-grained physical potentials and bioinformatically based local structure biasingAram Davtyan, Nicholas P Schafer, Weihua Zheng, et al.Proceedings of the National Academy of Sciences of the United States of America|February 16, 2019
Local frustration around enzyme active sitesMaria I Freiberger, A Brenda Guzovsky, Peter G Wolynes, et al.Journal of the American Chemical Society|August 5, 2025
Intersegment Transfer and the Dynamical Architecture of Fis Protein-DNA Multimer ComplexesXun Chen, Shikai Jin, Cheng-Han Liu, et al.Journal of Chemical Theory and Computation|September 22, 2018
Template-Guided Protein Structure Prediction and Refinement Using Optimized Folding Landscape Force FieldsMingchen Chen, Xingcheng Lin, Wei Lu, et al.Nucleic Acids Research|May 31, 2012
Protein frustratometer: a tool to localize energetic frustration in protein moleculesMichael Jenik, R Gonzalo Parra, Leandro G Radusky, et al.Proceedings of the National Academy of Sciences of the United States of America|November 1, 1993
Three-dimensional model for the hormone binding domains of steroid receptorsR A Goldstein, J A Katzenellenbogen, Z A Luthey-Schulten, et al.ACS Chemical Neuroscience|May 18, 2019
Steady, Symmetric, and Reversible Growth and Dissolution of Individual Amyloid-β FibrilsYuechuan Xu, Mohammad S Safari, Wenchuan Ma, et al.Proceedings of the National Academy of Sciences of the United States of America|February 16, 2007
Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurinChenghang Zong, Corey J Wilson, Tongye Shen, et al.Frontiers in Molecular Biosciences|September 10, 2021
Coarse-Grained Modeling and Molecular Dynamics Simulations of Ca2+-CalmodulinJules Nde, Pengzhi Zhang, Jacob C Ezerski, et al.Nature Chemical Biology|September 11, 2025
Real-time imaging of protein microenvironment changes in cells with rotor-based fluorescent amino acidsShudan Yang, Shikai Jin, Mengxi Zhang, et al.Pageof 192,403