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National Science Review|January 12, 2024
Improving error-correcting capability in DNA digital storage via soft-decision decodingLulu Ding, Shigang Wu, Zhihao Hou, et al.
Nature Methods|December 11, 2019
Fast and accurate long-read assembly with wtdbg2Jue Ruan, Heng Li
Genomics, Proteomics & Bioinformatics|August 29, 2024
BSAlign: A Library for Nucleotide Sequence AlignmentHaojing Shao, Jue Ruan
Genome Research|August 21, 2008
Mapping short DNA sequencing reads and calling variants using mapping quality scoresHeng Li, Jue Ruan, Richard Durbin
Bioinformatics (Oxford, England)|September 4, 2012
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq readsZechen Chong, Jue Ruan, Chung-I Wu
Journal of Genetics and Genomics = Yi Chuan Xue Bao|May 28, 2023
GAEP: a comprehensive genome assembly evaluating pipelineYong Zhang, Hong-Wei Lu, Jue Ruan
Bioinformatics (Oxford, England)|October 9, 2018
Accurate detection of chimeric contigs via Bionano optical mapsWeihua Pan, Stefano Lonardi
Advanced Science (Weinheim, Baden-Wurttemberg, Germany)|June 14, 2024
Overcoming the High Error Rate of Composite DNA Letters-Based Digital Storage through Soft-Decision DecodingYaping Xu, Lulu Ding, Shigang Wu, et al.
Gigabyte (Hong Kong, China)|November 14, 2024
TSTA: thread and SIMD-based trapezoidal pairwise/multiple sequence-alignment methodPeiyu Zong, Wenpeng Deng, Jian Liu, et al.
Gigabyte (Hong Kong, China)|February 24, 2023
SMARTdenovo: a de novo assembler using long noisy readsHailin Liu, Shigang Wu, Alun Li, et al.
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