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BMC Bioinformatics|January 5, 2017
JACUSA: site-specific identification of RNA editing events from replicate sequencing dataMichael Piechotta, Emanuel Wyler, Uwe Ohler, et al.
Trends in Genetics : TIG|September 25, 2021
Intricacies of single-cell multi-omics data integrationPia Rautenstrauch, Anna Hendrika Cornelia Vlot, Sepideh Saran, et al.
BMC Genomics|January 29, 2021
Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C dataHenriette Miko, Yunjiang Qiu, Bjoern Gaertner, et al.
Nucleic Acids Research|October 5, 2017
ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein dataDavid Heller, Ralf Krestel, Uwe Ohler, et al.
Bioinformatics (Oxford, England)|July 2, 2013
Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylationDina Hafez, Ting Ni, Sayan Mukherjee, et al.
Nature Communications|July 15, 2020
Deep learning for genomics using JangguWolfgang Kopp, Remo Monti, Annalaura Tamburrini, et al.
Methods in Molecular Biology (Clifton, N.J.)|March 25, 2021
Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquantDermot Harnett, Eelco Meerdink, Lorenzo Calviello, et al.
Genome Biology|January 23, 2003
Computational analysis of core promoters in the Drosophila genomeUwe Ohler, Guo-chun Liao, Heinrich Niemann, et al.
BMC Genomics|July 5, 2012
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approachJiandong Ding, Danqing Li, Uwe Ohler, et al.
Genome Biology|August 24, 2006
JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regionsJonathan E Allen, William H Majoros, Mihaela Pertea, et al.
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