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Nucleic Acids Research|May 1, 2023
Inferring cell diversity in single cell data using consortium-scale epigenetic data as a biological anchor for cell identityYuliangzi Sun, Woo Jun Shim, Sophie Shen, et al.
Nucleic Acids Research|November 12, 2025
Conserved facultative heterochromatin across cell types identify regulatory sequences underpinning cell identity and diseaseEnakshi Sinniah, Dalia Mizikovsky, Woo Jun Shim, et al.
Trends in Molecular Medicine|October 18, 2021
Integrating single-cell genomics pipelines to discover mechanisms of stem cell differentiationSophie Shen, Yuliangzi Sun, Maika Matsumoto, et al.
JACC. Basic to Translational Science|July 10, 2023
PDGF-AB Reduces Myofibroblast Differentiation Without Increasing Proliferation After Myocardial InfarctionRobert D Hume, Tejas Deshmukh, Tram Doan, et al.
Cell Systems|December 5, 2020
Conserved Epigenetic Regulatory Logic Infers Genes Governing Cell IdentityWoo Jun Shim, Enakshi Sinniah, Jun Xu, et al.
Biochemistry and Biophysics Reports|January 19, 2023
Repressive epigenetic mechanisms, such as the H3K27me3 histone modification, were predicted to affect muscle gene expression and its mineral content in Nelore cattleJuliana Afonso, Woo Jun Shim, Mikael Boden, et al.
Circulation Research|December 4, 2025
Human Hearts Intrinsically Increase Cardiomyocyte Mitosis After Myocardial InfarctionRobert D Hume, Jessica Warwick, Woo Jun Shim, et al.
Frontiers in Genetics|July 14, 2025
Putative epigenetic regulation mechanisms related to production, carcass and beef quality traits in Nelore cattleJuliana Afonso, Woo Jun Shim, Tainã Figueiredo Cardoso, et al.
Nature Communications|April 18, 2026
Glycaemic variability underlies myocyte dysfunction and myocardial injury risk in diabetesYuanzhao Cao, Meredith A Redd, Jennifer E Outhwaite, et al.
Nature Communications|February 5, 2025
Atlas of multilineage stem cell differentiation reveals TMEM88 as a developmental regulator of blood pressureSophie Shen, Tessa Werner, Samuel W Lukowski, et al.
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