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Viruses|December 17, 2020
Genomic Epidemiology of the First Wave of SARS-CoV-2 in ItalyFrancesca Di Giallonardo, Sebastian Duchene, Ilaria Puglia, et al.Microbial Genomics|August 31, 2023
The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into AustraliaAshleigh F Porter, Leo Featherstone, Courtney R Lane, et al.The Lancet. Digital Health|December 23, 2025
Bringing tuberculosis genomics to the clinic: development and validation of a comprehensive pipeline to predict antimicrobial susceptibility from genomic data, accredited to ISO standardsKristy A Horan, Linda Viberg, Susan A Ballard, et al.Communications Biology|June 17, 2022
A 16th century Escherichia coli draft genome associated with an opportunistic bile infectionGeorge S Long, Jennifer Klunk, Ana T Duggan, et al.Npj Viruses|April 28, 2025
Molecular epidemiology of the HIV-1 epidemic in FijiAtlesh Sudhakar, Donald Wilson, Rachel Devi, et al.Elife|June 14, 2022
Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infectionsStefano G Giulieri, Romain Guérillot, Sebastian Duchene, et al.Plos Neglected Tropical Diseases|April 24, 2018
Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policyCarl D Britto, Zoe A Dyson, Sebastian Duchene, et al.Elife|September 13, 2021
Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, KenyaSamuel Kariuki, Zoe A Dyson, Cecilia Mbae, et al.Current Biology : CB|February 25, 2023
Emergence, continuity, and evolution of Yersinia pestis throughout medieval and early modern DenmarkKatherine Eaton, Ravneet K Sidhu, Jennifer Klunk, et al.Nature Communications|August 10, 2021
Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in AustraliaDanielle J Ingle, Rebecca L Ambrose, Sarah L Baines, et al.Pageof 8