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Nature Communications|February 8, 2025
Modeling and designing enhancers by introducing and harnessing transcription factor binding unitsJiaqi Li, Pengcheng Zhang, Xi Xi, et al.Bioinformatics (Oxford, England)|June 28, 2024
Unveil cis-acting combinatorial mRNA motifs by interpreting deep neural networkXiaocheng Zeng, Zheng Wei, Qixiu Du, et al.Nucleic Acids Research|May 20, 2020
Synthetic promoter design in Escherichia coli based on a deep generative networkYe Wang, Haochen Wang, Lei Wei, et al.Bioinformatics (Oxford, England)|March 2, 2024
GPro: generative AI-empowered toolkit for promoter designHaochen Wang, Qixiu Du, Ye Wang, et al.Genomics, Proteomics & Bioinformatics|October 4, 2021
Single-cell Transcriptomes Reveal Characteristics of MicroRNAs in Gene Expression Noise ReductionTao Hu, Lei Wei, Shuailin Li, et al.Bioinformatics (Oxford, England)|July 26, 2015
CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activationHonglei Liu, Zheng Wei, Antonia Dominguez, et al.BMC Genomics|April 29, 2008
Functional importance of different patterns of correlation between adjacent cassette exons in human and mouseTao Peng, Chenghai Xue, Jianning Bi, et al.National Science Review|March 13, 2025
Foundation models in bioinformaticsFei Guo, Renchu Guan, Yaohang Li, et al.Nature Communications|October 9, 2023
Deep flanking sequence engineering for efficient promoter design using DeepSEEDPengcheng Zhang, Haochen Wang, Hanwen Xu, et al.Bioinformatics (Oxford, England)|July 5, 2005
MicroRNA identification based on sequence and structure alignmentXiaowo Wang, Jing Zhang, Fei Li, et al.Pageof 9