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Genome Research|January 21, 2017
HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologiesXian Fan, Mark Chaisson, Luay Nakhleh, et al.BMC Bioinformatics|September 10, 2014
Towards accurate characterization of clonal heterogeneity based on structural variationXian Fan, Wanding Zhou, Zechen Chong, et al.Bioinformatics (Oxford, England)|May 13, 2022
SimSCSnTree: a simulator of single-cell DNA sequencing dataXian Fan Mallory, Luay NakhlehGenome Research|October 20, 2019
SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing dataHamim Zafar, Nicholas Navin, Ken Chen, et al.Trends in Ecology & Evolution|October 8, 2013
Computational approaches to species phylogeny inference and gene tree reconciliationLuay NakhlehIEEE/ACM Transactions on Computational Biology and Bioinformatics|May 1, 2010
A metric on the space of reduced phylogenetic networksLuay NakhlehNature Methods|April 19, 2016
Monovar: single-nucleotide variant detection in single cellsHamim Zafar, Yong Wang, Luay Nakhleh, et al.Genome Biology|September 21, 2017
SiFit: inferring tumor trees from single-cell sequencing data under finite-sites modelsHamim Zafar, Anthony Tzen, Nicholas Navin, et al.International Journal of Bioinformatics Research and Applications|December 1, 2007
Recombination and phylogeny: effects and detectionDerek Ruths, Luay NakhlehProceedings of the National Academy of Sciences of the United States of America|April 24, 2013
Neutral forces acting on intragenomic variability shape the Escherichia coli regulatory network topologyTroy Ruths, Luay NakhlehPageof 83