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Plos One|March 24, 2015
Comparative 3D genome structure analysis of the fission and the budding yeastKe Gong, Harianto Tjong, Xianghong Jasmine Zhou, et al.Bioinformatics (Oxford, England)|November 14, 2014
Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C dataWenyuan Li, Ke Gong, Qingjiao Li, et al.Nature Protocols|April 7, 2018
Producing genome structure populations with the dynamic and automated PGS softwareNan Hua, Harianto Tjong, Hanjun Shin, et al.Nucleic Acids Research|December 26, 2015
TopDom: an efficient and deterministic method for identifying topological domains in genomesHanjun Shin, Yi Shi, Chao Dai, et al.Genome Biology|August 2, 2017
The three-dimensional genome organization of Drosophila melanogaster through data integrationQingjiao Li, Harianto Tjong, Xiao Li, et al.Nucleic Acids Research|May 28, 2025
3D genome organization shapes DNA damage susceptibility to platinum-based drugsYe Wang, Asli Yildirim, Lorenzo Boninsegna, et al.Methods in Molecular Biology (Clifton, N.J.)|July 18, 2014
Matrix factorization methods for integrative cancer genomicsShihua Zhang, Xianghong Jasmine ZhouGenome Biology|July 9, 2004
Cross-species comparison of genome-wide expression patternsXianghong Jasmine Zhou, Greg GibsonNature Structural & Molecular Biology|August 14, 2023
Evaluating the role of the nuclear microenvironment in gene function by population-based modelingAsli Yildirim, Nan Hua, Lorenzo Boninsegna, et al.Nature Communications|June 1, 2016
Mining 3D genome structure populations identifies major factors governing the stability of regulatory communitiesChao Dai, Wenyuan Li, Harianto Tjong, et al.Pageof 12