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Cell Genomics|September 18, 2023
Identifying genetic regulatory variants that affect transcription factor activityXiaoting Li, Tuuli Lappalainen, Harmen J BussemakerGenome Biology|November 1, 2024
Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding dataXiaoting Li, Lucas A N Melo, Harmen J BussemakerBiorxiv : the Preprint Server for Biology|January 3, 2024
Benchmarking DNA binding affinity models using allele-specific transcription factor binding dataXiaoting Li, Lucas A N Melo, Harmen J BussemakerPlos Genetics|January 31, 2022
Transcription factor regulation of eQTL activity across individuals and tissuesElise D Flynn, Athena L Tsu, Silva Kasela, et al.Molecular Systems Biology|September 25, 2010
Identifying the genetic determinants of transcription factor activityEunjee Lee, Harmen J BussemakerNucleic Acids Research|June 26, 2003
REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray dataCrispin Roven, Harmen J BussemakerGenome Research|October 3, 2015
Functional genomics bridges the gap between quantitative genetics and molecular biologyTuuli LappalainenBioinformatics (Oxford, England)|July 1, 2008
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequencesLucas D Ward, Harmen J BussemakerNucleic Acids Research|April 12, 2003
Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of modelsRonald Jansen, Harmen J Bussemaker, Mark GersteinBMC Genomics|June 21, 2014
Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeastLucas D Ward, Junbai Wang, Harmen J BussemakerPageof 57