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BMC Bioinformatics|February 15, 2022
D3PM: a comprehensive database for protein motions ranging from residue to domainCheng Peng, Xinben Zhang, Zhijian Xu, et al.Journal of Chemical Information and Modeling|May 3, 2021
D3DistalMutation: a Database to Explore the Effect of Distal Mutations on Enzyme ActivityXiaoyu Wang, Xinben Zhang, Cheng Peng, et al.Journal of Chemical Information and Modeling|July 3, 2019
D3Pockets: A Method and Web Server for Systematic Analysis of Protein Pocket DynamicsZhaoqiang Chen, Xinben Zhang, Cheng Peng, et al.Briefings in Bioinformatics|January 18, 2021
Ligand-based approach for predicting drug targets and for virtual screening against COVID-19Yanqing Yang, Zhengdan Zhu, Xiaoyu Wang, et al.Journal of Chemical Information and Modeling|January 11, 2024
D3Rings: A Fast and Accurate Method for Ring System Identification and Deep Generation of Drug-Like Cyclic CompoundsMinfei Ma, Xinben Zhang, Liping Zhou, et al.Acta Pharmaceutica Sinica. B|April 23, 2020
D3Targets-2019-nCoV: a webserver for predicting drug targets and for multi-target and multi-site based virtual screening against COVID-19Yulong Shi, Xinben Zhang, Kaijie Mu, et al.The Journal of Physical Chemistry Letters|December 4, 2020
Computational Insights into the Conformational Accessibility and Binding Strength of SARS-CoV-2 Spike Protein to Human Angiotensin-Converting Enzyme 2Cheng Peng, Zhengdan Zhu, Yulong Shi, et al.Scientific Reports|August 10, 2016
Repositioning organohalogen drugs: a case study for identification of potent B-Raf V600E inhibitors via docking and bioassayYisu Li, Binbin Guo, Zhijian Xu, et al.Computers in Biology and Medicine|November 3, 2022
D3AI-Spike: A deep learning platform for predicting binding affinity between SARS-CoV-2 spike receptor binding domain with multiple amino acid mutations and human angiotensin-converting enzyme 2Jiaxin Han, Tingting Liu, Xinben Zhang, et al.Briefings in Bioinformatics|March 30, 2024
D3EGFR: a webserver for deep learning-guided drug sensitivity prediction and drug response information retrieval for EGFR mutation-driven lung cancerYulong Shi, Chongwu Li, Xinben Zhang, et al.Pageof 2