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BMC Systems Biology|February 26, 2014
Characterizing dynamic regulatory programs in mouse lung development and their potential association with tumourigenesis via miRNA-TF-mRNA circuitsJuan Liu, Xinghuo Ye, Fang-Xiang WuBMC Bioinformatics|November 26, 2013
Ensemble classifier based on context specific miRNA regulation modules: a new method for cancer outcome predictionXionghui Zhou, Juan Liu, Xinghuo Ye, et al.Biomolecules|November 11, 2022
Drug Repositioning Based on the Enhanced Message Passing and Hypergraph Convolutional NetworksWeihong Huang, Zhong Li, Yanlei Kang, et al.Current Issues in Molecular Biology|January 20, 2023
Identification of Specific Pathogen-Infected sRNA-Mediated Interactions between Turnip Yellows Virus and Arabidopsis thalianaRuiyang Yu, Xinghuo Ye, Chenghua Zhang, et al.BMC Bioinformatics|August 18, 2011
Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based featureWen Zhang, Yi Xiong, Meng Zhao, et al.Scientific Reports|January 7, 2016
miRNA Digger: a comprehensive pipeline for genome-wide novel miRNA miningLan Yu, Chaogang Shao, Xinghuo Ye, et al.Genomics|November 21, 2018
Identification of novel phasiRNAs loci on long non-coding RNAs in Arabidopsis thalianaLan Yu, Rongkai Guo, Yeqin Jiang, et al.Bioscience, Biotechnology, and Biochemistry|October 26, 2018
Genome-wide identification and characterization of novel microRNAs in seed development of soybeanLan Yu, Rongkai Guo, Yeqin Jiang, et al.Plos One|December 28, 2020
sRNATargetDigger: A bioinformatics software for bidirectional identification of sRNA-target pairs with co-regulatory sRNAs informationXinghuo Ye, Zhihong Yang, Yeqin Jiang, et al.BMC Genomics|January 31, 2021
Degradome sequencing-based identification of phasiRNAs biogenesis pathways in Oryza sativaLan Yu, Rongkai Guo, Yeqin Jiang, et al.Pageof 1