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Genomics & Informatics|November 1, 2024
Bioregulatory event extraction using large language models: a case study of rice literatureXinzhi Yao, Zhihan He, Jingbo XiaJMIR Medical Informatics|June 18, 2021
A Novel Metric to Quantify the Effect of Pathway Enrichment Evaluation With Respect to Biomedical Text-Mined Terms: Development and Feasibility StudyXuan Qin, Xinzhi Yao, Jingbo XiaGenomics & Informatics|February 11, 2026
Consistency-accuracy correlation in hard-prompted LLMs for entity and relation extraction: empirical findings from plant-health dataXinzhi Yao, Claire Nédellec, Jingbo Xia, et al.Genomics & Informatics|October 12, 2021
OryzaGP 2021 update: a rice gene and protein dataset for named-entity recognitionPierre Larmande, Yusha Liu, Xinzhi Yao, et al.Scientific Data|March 2, 2024
Cancer-Alterome: a literature-mined resource for regulatory events caused by genetic alterations in cancerXinzhi Yao, Zhihan He, Yawen Liu, et al.Genomics & Informatics|December 2, 2025
A curation system of rice trait ontology with reliable interoperation by LLM and PubAnnotationJaveed Muhammad Ahmad, Yawen Liu, Jin-Dong Kim, et al.Genome Medicine|April 16, 2024
PheSeq, a Bayesian deep learning model to enhance and interpret the gene-disease association studiesXinzhi Yao, Sizhuo Ouyang, Yulong Lian, et al.Journal of Biomedical Informatics|January 7, 2022
High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decompositionKaiyin Zhou, Sheng Zhang, Yuxing Wang, et al.Frontiers in Veterinary Science|February 22, 2024
Fecal PCR survey and genome analysis of Lawsonia intracellularis in ChinaLei Wang, Wenqing Wu, Lifeng Zhao, et al.Communications Medicine|September 1, 2025
Global trends of antimicrobial resistance and virulence of Klebsiella pneumoniae from different host sourcesXi Huang, Xinzhi Yao, Yanyan Hou, et al.Pageof 2