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Biorxiv : the Preprint Server for Biology|February 24, 2025
ML-MAGES: A machine learning framework for multivariate genetic association analyses with genes and effect size shrinkageXiran Liu, Lorin Crawford, Sohini RamachandranGenome Research|November 19, 2025
ML-MAGES enables multivariate genetic association analyses with genes and effect size shrinkageXiran Liu, Lorin Crawford, Sohini RamachandranPlos Genetics|June 17, 2020
Estimation of non-null SNP effect size distributions enables the detection of enriched genes underlying complex traitsWei Cheng, Sohini Ramachandran, Lorin CrawfordIscience|June 30, 2022
Uncertainty quantification in variable selection for genetic fine-mapping using bayesian neural networksWei Cheng, Sohini Ramachandran, Lorin CrawfordBiorxiv : the Preprint Server for Biology|April 10, 2026
Systematic clustering alignment and feature characterization for single-cell omics using ACE-OF-ClustXiran Liu, Ritambhara Singh, Sohini RamachandranHuman Population Genetics and Genomics|May 14, 2026
KAlignedoscope: An interactive visualization tool for aligned clustering results from population structure analysesAvery Guo, Sohini Ramachandran, Xiran LiuHuman Population Genetics and Genomics|May 14, 2026
Clumppling 2.0: A Clustering Alignment Program for Population Structure AnalysesXiran Liu, Noah A Rosenberg, Sohini RamachandranPlos Genetics|August 19, 2021
Multi-scale inference of genetic trait architecture using biologically annotated neural networksPinar Demetci, Wei Cheng, Gregory Darnell, et al.Elife|June 24, 2024
Discovering non-additive heritability using additive GWAS summary statisticsSamuel Pattillo Smith, Gregory Darnell, Dana Udwin, et al.Plos Genetics|March 18, 2021
Natural variation in the regulation of neurodevelopmental genes modifies flight performance in DrosophilaAdam N Spierer, Jim A Mossman, Samuel Pattillo Smith, et al.Pageof 12