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Molecular Diversity|September 30, 2025
MMADPE: drug repositioning based on multi-hop graph Mamba aggregation with dual-modality graph positional encodingPengli Lu, Mingxu Li, Fentang GaoAnalytical Biochemistry|August 9, 2025
HCNS:A deep learning model for identifying essential proteins based on hypergraph convolution and sequence featuresJialong Tian, Pengli Lu, Huining ShaIEEE Transactions on Computational Biology and Bioinformatics|December 18, 2025
Multi-Head Hypergraph Convolution with Feature Enhancement and Latent Representation Learning for miRNA-disease Association PredictionPengli Lu, Zhong Yan, Fentang GaoIEEE Transactions on Computational Biology and Bioinformatics|September 2, 2025
Prediction of circRNA-Disease Associations Based on Graph Isomorphism Networks and Graph Sampling AggregationPengli Lu, Xusheng Liu, Fentang GaoIEEE Transactions on Computational Biology and Bioinformatics|August 14, 2025
Enhancing Disease-Metabolite Associations Prediction With Weighted Graph Convolutional Networks Based on Community-Driven Link CompletionWenzhi Liu, Pengli Lu, Jiejun ZhouAnalytical Biochemistry|July 28, 2024
Identifying circRNA-disease association based on relational graph attention network and hypergraph attention networkPengLi Lu, Jinkai Wu, Wenqi ZhangComputational Biology and Chemistry|November 28, 2023
AMPCDA: Prediction of circRNA-disease associations by utilizing attention mechanisms on metapathsPengli Lu, Wenqi Zhang, Jinkai WuComputational Biology and Chemistry|January 2, 2025
DMNAG: Prediction of disease-metabolite associations based on Neighborhood Aggregation Graph TransformerPengli Lu, Jiajie Gao, Wenzhi LiuInterdisciplinary Sciences, Computational Life Sciences|March 13, 2026
GMC-DMA: GNN-Mamba Co-Contrastive Optimization for Disease-Metabolite Association PredictionJian Zhang, Pengli Lu, Fentang GaoAnalytical Biochemistry|May 6, 2024
Predicting associations between CircRNA and diseases through structure-aware graph transformer and path-integral convolutionJinkai Wu, PengLi Lu, Wenqi ZhangPageof 80