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BMC Bioinformatics|February 2, 2013
Efficient known ncRNA search including pseudoknotsCheng Yuan, Yanni SunPlos One|November 9, 2013
RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomesCheng Yuan, Yanni SunBioinformatics (Oxford, England)|September 3, 2016
Improve homology search sensitivity of PacBio data by correcting frameshiftsNan Du, Yanni SunJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 20, 2005
Designing multiple simultaneous seeds for DNA similarity searchYanni Sun, Jeremy BuhlerBioinformatics (Oxford, England)|January 24, 2007
Designing patterns for profile HMM searchYanni Sun, Jeremy BuhlerMethods (San Diego, Calif.)|May 27, 2020
CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRningJiayu Shang, Yanni SunBioinformatics (Oxford, England)|September 3, 2016
Assemble CRISPRs from metagenomic sequencing dataJikai Lei, Yanni SunBioinformatics (Oxford, England)|February 14, 2022
Reconstructing viral haplotypes using long readsDehan Cai, Yanni SunBioinformatics (Oxford, England)|June 16, 2014
miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq dataJikai Lei, Yanni SunComputational Systems Bioinformatics. Computational Systems Bioinformatics Conference|August 1, 2009
Designing secondary structure profiles for fast ncRNA identificationYanni Sun, Jeremy BuhlerPageof 16