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BMC Genomics|April 11, 2019
Improving the sensitivity of long read overlap detection using grouped short k-mer matchesNan Du, Jiao Chen, Yanni SunBioinformatics (Oxford, England)|April 5, 2018
De novo haplotype reconstruction in viral quasispecies using paired-end read guided path findingJiao Chen, Yingchao Zhao, Yanni SunJournal of Bioinformatics and Computational Biology|April 28, 2011
ncRNA consensus secondary structure derivation using grammar stringsRujira Achawanantakun, Yanni Sun, Seyedeh Shohreh TakyarBMC Bioinformatics|October 27, 2017
A sensitive short read homology search tool for paired-end read sequencing dataPrapaporn Techa-Angkoon, Yanni Sun, Jikai LeiIEEE/ACM Transactions on Computational Biology and Bioinformatics|August 10, 2013
Chain-RNA: a comparative ncRNA search tool based on the two-dimensional chain algorithmJikai Lei, Prapaporn Techa-Angkoon, Yanni SunBioinformatics (Oxford, England)|June 21, 2013
A Sensitive and Accurate protein domain cLassification Tool (SALT) for short readsYuan Zhang, Yanni Sun, James R ColePlos Computational Biology|August 15, 2014
A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing dataYuan Zhang, Yanni Sun, James R ColeBioinformatics (Oxford, England)|February 17, 2025
MOSTPLAS: a self-correction multi-label learning model for plasmid host range predictionWei Zou, Yongxin Ji, Jiaojiao Guan, et al.Briefings in Bioinformatics|July 21, 2023
HMMPolish: a coding region polishing tool for TGS-sequenced RNA virusesRunzhou Yu, Syed Muhammad Umer Abdullah, Yanni SunBMC Bioinformatics|November 6, 2019
A binning tool to reconstruct viral haplotypes from assembled contigsJiao Chen, Jiayu Shang, Jianrong Wang, et al.Pageof 16