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Briefings in Bioinformatics
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July 28, 2022
GLOBE: a contrastive learning-based framework for integrating single-cell transcriptome datasets
Xuhua Yan, Ruiqing Zheng, Min Li
Bioinformatics (Oxford, England)
|
August 16, 2023
scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization
Xuhua Yan, Ruiqing Zheng, Jinmiao Chen, et al.
Bioinformatics (Oxford, England)
|
February 23, 2023
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity
Xuhua Yan, Ruiqing Zheng, Fangxiang Wu, et al.
Genomics, Proteomics & Bioinformatics
|
August 4, 2025
ACE: A Versatile Contrastive Learning Framework for Single-cell Mosaic Integration
Xuhua Yan, Jinmiao Chen, Ruiqing Zheng, et al.
Briefings in Bioinformatics
|
December 25, 2022
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data
Siqi Chen, Xuhua Yan, Ruiqing Zheng, et al.
Methods (San Diego, Calif.)
|
July 1, 2022
A deep matrix factorization based approach for single-cell RNA-seq data clustering
Zhenlan Liang, Ruiqing Zheng, Siqi Chen, et al.
Genome Research
|
January 20, 2026
scSHEFT enables multiomics label transfer from scRNA-seq to scATAC-seq through dual alignment
Zhitao Huang, Ruiqing Zheng, Pengzhen Jia, et al.
IEEE Journal of Biomedical and Health Informatics
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May 29, 2026
Glaucoma Diagnosis and Progression Prediction Based on Deep Multimodal Fusion and Collaborative Attention Mechanism
Wei Lan, Zhentao Tang, Xuhua Yan, et al.
Genomics, Proteomics & Bioinformatics
|
March 1, 2021
SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement
Zhenlan Liang, Min Li, Ruiqing Zheng, et al.
Nature Genetics
|
April 24, 2026
Mosaic integration of spatial multi-omics with SpaMosaic
Xuhua Yan, Zhaoyu Fang, Kok Siong Ang, et al.
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of 2
Search research articles
Search
Showing results (1-10 of 11) with videos related to
Sort By:
Page
of 2
Briefings in Bioinformatics
|
July 28, 2022
GLOBE: a contrastive learning-based framework for integrating single-cell transcriptome datasets
Xuhua Yan, Ruiqing Zheng, Min Li
Bioinformatics (Oxford, England)
|
August 16, 2023
scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization
Xuhua Yan, Ruiqing Zheng, Jinmiao Chen, et al.
Bioinformatics (Oxford, England)
|
February 23, 2023
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity
Xuhua Yan, Ruiqing Zheng, Fangxiang Wu, et al.
Genomics, Proteomics & Bioinformatics
|
August 4, 2025
ACE: A Versatile Contrastive Learning Framework for Single-cell Mosaic Integration
Xuhua Yan, Jinmiao Chen, Ruiqing Zheng, et al.
Briefings in Bioinformatics
|
December 25, 2022
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data
Siqi Chen, Xuhua Yan, Ruiqing Zheng, et al.
Methods (San Diego, Calif.)
|
July 1, 2022
A deep matrix factorization based approach for single-cell RNA-seq data clustering
Zhenlan Liang, Ruiqing Zheng, Siqi Chen, et al.
Genome Research
|
January 20, 2026
scSHEFT enables multiomics label transfer from scRNA-seq to scATAC-seq through dual alignment
Zhitao Huang, Ruiqing Zheng, Pengzhen Jia, et al.
IEEE Journal of Biomedical and Health Informatics
|
May 29, 2026
Glaucoma Diagnosis and Progression Prediction Based on Deep Multimodal Fusion and Collaborative Attention Mechanism
Wei Lan, Zhentao Tang, Xuhua Yan, et al.
Genomics, Proteomics & Bioinformatics
|
March 1, 2021
SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement
Zhenlan Liang, Min Li, Ruiqing Zheng, et al.
Nature Genetics
|
April 24, 2026
Mosaic integration of spatial multi-omics with SpaMosaic
Xuhua Yan, Zhaoyu Fang, Kok Siong Ang, et al.
Page
of 2