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Briefings in Bioinformatics|March 11, 2025
GEMDiff: a diffusion workflow bridges between normal and tumor gene expression states: a breast cancer case studyXusheng Ai, Melissa C Smith, F Alex FeltusBMC Systems Biology|June 7, 2013
Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case studyF Alex Feltus, Stephen P Ficklin, Scott M Gibson, et al.Scientific Reports|July 7, 2019
Uncovering biomarker genes with enriched classification potential from Hallmark gene setsColin A Targonski, Courtney A Shearer, Benjamin T Shealy, et al.Plant Science : an International Journal of Experimental Plant Biology|April 29, 2014
Systems genetics: a paradigm to improve discovery of candidate genes and mechanisms underlying complex traitsF Alex FeltusPatterns (New York, N.Y.)|November 18, 2020
Cellular State Transformations Using Deep Learning for Precision Medicine ApplicationsColin Targonski, M Reed Bender, Benjamin T Shealy, et al.Plos One|August 7, 2019
EdgeScaping: Mapping the spatial distribution of pairwise gene expression intensitiesBenafsh Husain, F Alex FeltusPlant Physiology|May 25, 2011
Gene coexpression network alignment and conservation of gene modules between two grass species: maize and riceStephen P Ficklin, F Alex FeltusBMC Genomics|April 19, 2011
Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomesNiina Haiminen, F Alex Feltus, Laxmi ParidaPlant Physiology|July 30, 2010
The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networksStephen P Ficklin, Feng Luo, F Alex FeltusCurrent Genetics|April 28, 2009
The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oakShin Sato, F Alex Feltus, Prashanti Iyer, et al.Pageof 7