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Plos One|January 13, 2012
Combining optimal control theory and molecular dynamics for protein foldingYaman Arkun, Mert GurBMC Bioinformatics|November 30, 2019
Detection of biological switches using the method of Gröebner basesYaman ArkunPlos One|March 2, 2016
Dynamic Modeling and Analysis of the Cross-Talk between Insulin/AKT and MAPK/ERK Signaling PathwaysYaman ArkunPlos One|January 9, 2014
Regulatory networks and complex interactions between the insulin and angiotensin II signalling systems: models and implications for hypertension and diabetesDeniz Cizmeci, Yaman ArkunPlos One|April 10, 2018
Dynamics and control of the ERK signaling pathway: Sensitivity, bistability, and oscillationsYaman Arkun, Mohammadreza YasemiPlos One|October 23, 2010
Prediction of optimal folding routes of proteins that satisfy the principle of lowest entropy loss: dynamic contact maps and optimal controlYaman Arkun, Burak ErmanThe Journal of Chemical Physics|April 15, 2006
Optimum folding pathways of proteins: their determination and propertiesUğur Güner, Yaman Arkun, Burak ErmanPhysical Chemistry Chemical Physics : PCCP|March 13, 2009
Determination of pair-wise inter-residue interaction forces from folding pathways and their implementation in coarse-grained folding predictionSefer Baday, Burak Erman, Yaman ArkunJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 22, 2005
Folding dynamics of proteins from denatured to native state: principal component analysisAhmet Palazoglu, Attila Gursoy, Yaman Arkun, et al.Physical Biology|January 11, 2008
Optimum folding pathways for growing protein chainsSerife Senturk, Sefer Baday, Yaman Arkun, et al.Pageof 5