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Frontiers in Genetics|May 27, 2024
LcDel: deletion variation detection based on clustering and long readsYanan Yu, Runtian Gao, Junwei LuoBMC Bioinformatics|March 6, 2023
INSnet: a method for detecting insertions based on deep learning networkRuntian Gao, Junwei Luo, Hongyu Ding, et al.Frontiers in Genetics|June 30, 2023
LSnet: detecting and genotyping deletions using deep learning networkJunwei Luo, Runtian Gao, Wenjing Chang, et al.Briefings in Bioinformatics|May 17, 2022
MAMnet: detecting and genotyping deletions and insertions based on long reads and a deep learning approachHongyu Ding, Junwei LuoBriefings in Bioinformatics|January 7, 2026
GFSeeker: a splicing-graph-based approach for accurate gene fusion detection from long-read RNA sequencing dataBingyan Wang, Heng Hu, Runtian Gao, et al.Frontiers in Genetics|May 21, 2024
CD-Loop: a chromatin loop detection method based on the diffusion modelJiquan Shen, Yang Wang, Junwei LuoPeerj. Computer Science|August 15, 2024
Predicting the satisfiability of Boolean formulas by incorporating gated recurrent unit (GRU) in the Transformer frameworkWenjing Chang, Mengyu Guo, Junwei LuoBriefings in Bioinformatics|January 22, 2026
PHScaffolding: a hypergraph clustering and dual-weight integration strategy for scaffolding with Pore-C readsQuan Su, Junwei Luo, Fei GuoBMC Bioinformatics|June 4, 2026
THC-net: an attention-based deep learning model for chromatin compartment prediction from histone modificationsJunfeng Wang, Xiangchao Meng, Jiquan Shen, et al.Interdisciplinary Sciences, Computational Life Sciences|December 23, 2024
HiSVision: A Method for Detecting Large-Scale Structural Variations Based on Hi-C Data and Detection TransformerHaixia Zhai, Chengyao Dong, Tao Wang, et al.Pageof 31