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Current Opinion in Structural Biology|November 1, 2013
Coarse-grain modelling of protein-protein interactionsMarc Baaden, Siewert J MarrinkJournal of Chemical Theory and Computation|January 10, 2023
Martini 3 Coarse-Grained Model for Second-Generation Unidirectional Molecular Motors and SwitchesPetteri Vainikka, Siewert J MarrinkNature Communications|April 16, 2026
Folded domains impose structural heterogeneity and attenuated dynamics in biomolecular condensatesLiguo Wang, Siewert J MarrinkCurrent Opinion in Cell Biology|March 15, 2021
Simulating realistic membrane shapesWeria Pezeshkian, Siewert J MarrinkJournal of the American Chemical Society|December 24, 2011
Molecular view of the role of fusion peptides in promoting positive membrane curvatureMarc Fuhrmans, Siewert J MarrinkJournal of Chemical Theory and Computation|June 16, 2023
Reactive Martini: Chemical Reactions in Coarse-Grained Molecular Dynamics SimulationsSelim Sami, Siewert J MarrinkPhysical Chemistry Chemical Physics : PCCP|August 25, 2010
Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranesDurba Sengupta, Siewert J MarrinkJournal of Chemical Information and Modeling|March 26, 2025
MartiniGlass: a Tool for Enabling Visualization of Coarse-Grained Martini TopologiesChristopher Brasnett, Siewert J MarrinkElife|November 20, 2025
Martinize2 and Vermouth provide a unified framework for molecular topology generationPeter C Kroon, Fabian Grünewald, Jonathan Barnoud, et al.QRB Discovery|August 2, 2023
Computational prediction of ω-transaminase selectivity by deep learning analysis of molecular dynamics trajectoriesCarlos Ramírez-Palacios, Siewert J MarrinkPageof 2,407