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Methods in Molecular Biology (Clifton, N.J.)|August 10, 2019
A Practical View of the Martini Force FieldBart M H Bruininks, Paulo C T Souza, Siewert J MarrinkThe Journal of Physical Chemistry Letters|January 20, 2023
pH-Dependent Conformational Switch Impacts Stability of the PsbS DimerMaria Gabriella Chiariello, Fabian Grünewald, Rubi Zarmiento-Garcia, et al.Biophysical Journal|April 6, 2011
Protein shape change has a major effect on the gating energy of a mechanosensitive channelO H Samuli Ollila, Martti Louhivuori, Siewert J Marrink, et al.Journal of Molecular Modeling|August 9, 2014
Establishing conditions for simulating hydrophobic solutes in electric fields by molecular dynamics: effects of the long-range van der Waals treatment on the apparent particle mobilityZoran Miličević, Siewert J Marrink, Ana-Sunčana Smith, et al.Plos Computational Biology|October 3, 2012
Structural investigation of MscL gating using experimental data and coarse grained MD simulationsEvelyne Deplazes, Martti Louhivuori, Dylan Jayatilaka, et al.Elife|April 17, 2020
A molecular view on the escape of lipoplexed DNA from the endosomeBart Mh Bruininks, Paulo Ct Souza, Helgi Ingolfsson, et al.The Journal of Chemical Physics|April 5, 2014
Simulation of polyethylene glycol and calcium-mediated membrane fusionMartina Pannuzzo, Djurre H De Jong, Antonio Raudino, et al.Methods in Molecular Biology (Clifton, N.J.)|October 22, 2014
Coarse-grained force fields for molecular simulationsJonathan Barnoud, Luca MonticelliMolecules (Basel, Switzerland)|October 13, 2021
Comparing Dimerization Free Energies and Binding Modes of Small Aromatic Molecules with Different Force FieldsIlias Patmanidis, Riccardo Alessandri, Alex H de Vries, et al.Nature Communications|February 10, 2026
Oxygen depletion in biomolecular condensates is dominated by macromolecular densityAnkush Garg, Christopher Brasnett, Siewert J Marrink, et al.Pageof 2,407