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BMC Bioinformatics|June 19, 2024
PxBLAT: an efficient python binding library for BLATYangyang Li, Rendong YangBiorxiv : the Preprint Server for Biology|August 14, 2023
PxBLAT: An efficient python binding library for BLATYangyang Li, Rendong YangBioinformatics (Oxford, England)|September 13, 2022
ScanExitronLR: characterization and quantification of exitron splicing events in long-read RNA-seq dataJoshua Fry, Yangyang Li, Rendong YangBiorxiv : the Preprint Server for Biology|July 10, 2026
Analysis of isoform complexity in pan-transcriptome graphs with atroplexRichard A Schäfer, Yangyang Li, Joshua Fry, et al.Biorxiv : the Preprint Server for Biology|April 8, 2025
OctopusV and TentacleSV: a one-stop toolkit for multi-sample, cross-platform structural variant comparison and analysisQingxiang Guo, Yangyang Li, Ting-You Wang, et al.Bioinformatics (Oxford, England)|October 31, 2025
OctopuSV and TentacleSV: a one-stop toolkit for multi-sample, cross-platform structural variant comparison and analysisQingxiang Guo, Yangyang Li, Ting-You Wang, et al.Nature Communications|January 19, 2026
Genomic language model mitigates chimera artifacts in nanopore direct RNA sequencingYangyang Li, Ting-You Wang, Qingxiang Guo, et al.Biorxiv : the Preprint Server for Biology|November 1, 2024
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA SequencingYangyang Li, Ting-You Wang, Qingxiang Guo, et al.Bioinformatics (Oxford, England)|June 10, 2010
Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimationRendong Yang, Zhen SuSTAR Protocols|September 15, 2021
Integrated protocol for exitron and exitron-derived neoantigen identification using human RNA-seq data with ScanExitron and ScanNeoTing-You Wang, Rendong YangPageof 93